FASTR¶
FASTR is a framework that helps creating workflows of different tools. The workflows created in FASTR are automatically enhanced with flexible data input/output, execution options (local, cluster, etc) and solid provenance.
We chose to create tools by creating wrappers around executables and connecting everything with Python.
Fastr is open-source (licensed under the Apache 2.0 license) and hosted on gitlab at https://gitlab.com/radiology/infrastructure/fastr
For support, go to https://groups.google.com/d/forum/fastr-users
To get yourself a copy, see the Installation
The official documentation can be found at fastr.readthedocs.io
The Fastr workflow system is presented in the following article:
Fastr is made possible by contributions from the following people: Hakim Achterberg, Marcel Koek, Adriaan Versteeg, Thomas Phil, Mattias Hansson, Baldur van Lew, Marcel Zwiers, and Coert Metz
FASTR Documentation¶
- Introduction
- Quick start guide
- User Manual
- Command Line Tools
- Resource File Formats
- Plugin Reference
- Development and Design Documentation
- Changelog
- 3.2.1 - 2020-06-22
- 3.2.0 - 2020-06-19
- 3.1.4 - 2020-06-10
- 3.1.3 - 2019-11-28
- 3.1.2 - 2019-06-18
- 3.1.1 - 2019-05-02
- 3.1.0 - 2019-05-02
- 3.0.1 - 2019-03-28
- 3.0.0 - 2019-03-05
- 2.1.2 - 2018-10-24
- 2.1.1 - 2018-06-29
- 2.1.0 - 2018-04-13
- 2.0.1 - 2017-10-19
- 2.0.0 - 2017-09-28
- 1.2.2 - 2017-08-24
- 1.2.1 - 2017-04-04
- 1.2.0 - 2017-03-15
- 1.1.2 - 2016-12-22
- 1.1.1 - 2016-12-22
- 1.1.0 - 2016-12-08
FASTR User reference¶
FASTR Developer Module reference¶
- fastr Package
fastr
Packageexceptions
Moduleversion
Module- Subpackages
- api Package
- core Package
- data Package
- datatypes Package
- execution Package
- helpers Package
helpers
Packagechecksum
Moduleclassproperty
Moduleclear_pycs
Moduleconfigmanager
Moduleevents
Modulefilesynchelper
Moduleiohelpers
Modulejsonschemaparser
Modulelazy_module
Modulelockfile
Moduleprocutils
Modulereport
Modulerest_generation
Moduleschematotable
Moduleshellescape
Modulesysinfo
Modulexmltodict
Module
- planning Package
- plugins Package
- test Package
- utils Package